##FastQC	0.10.0
>>Basic Statistics	pass
#Measure	Value	
Filename	lane2_Index12_1.fq	
File type	Conventional base calls	
Encoding	Illumina 1.5	
Total Sequences	20868140	
Filtered Sequences	0	
Sequence length	90	
%GC	49	
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	32.14263250102788	33.0	31.0	34.0	31.0	34.0
2	32.39114314931757	34.0	31.0	34.0	31.0	34.0
3	32.411987220710614	34.0	31.0	34.0	30.0	34.0
4	36.05753248732278	37.0	35.0	37.0	35.0	37.0
5	35.940674636072025	37.0	35.0	37.0	35.0	37.0
6	35.914794945788174	37.0	35.0	37.0	35.0	37.0
7	35.863736921450595	37.0	35.0	37.0	35.0	37.0
8	35.859893502727125	37.0	35.0	37.0	35.0	37.0
9	37.57109967634873	39.0	37.0	39.0	35.0	39.0
10-14	37.735112281209545	39.2	37.2	39.4	34.2	39.4
15-19	38.81137274333027	40.0	38.0	41.0	34.8	41.0
20-24	38.677198140323	40.0	38.0	41.0	34.0	41.0
25-29	38.44738419427894	40.0	38.0	41.0	34.0	41.0
30-34	38.14890640948355	40.0	37.8	41.0	33.0	41.0
35-39	37.855668353767996	40.0	37.0	41.0	33.0	41.0
40-44	37.64898276511467	39.8	36.8	41.0	32.2	41.0
45-49	37.22845577037532	39.0	35.8	41.0	31.0	41.0
50-54	36.90221207064933	39.0	35.0	40.6	31.0	41.0
55-59	36.662240055893825	38.4	35.0	40.6	31.0	41.0
60-64	35.96281409842947	37.2	34.4	40.0	30.0	41.0
65-69	35.19441438479903	35.8	34.0	39.2	29.4	41.0
70-74	34.33866051310754	35.0	33.6	38.0	29.0	40.2
75-79	33.20967219886391	34.8	32.4	36.2	27.6	39.0
80-84	32.90066231106366	35.0	33.0	35.6	27.6	37.2
85-89	32.09734179471673	35.0	32.8	35.0	26.4	36.2
90	31.61572603020681	35.0	32.0	35.0	26.0	36.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
10	3.0
11	26.0
12	129.0
13	947.0
14	3737.0
15	9207.0
16	15109.0
17	20579.0
18	25878.0
19	31401.0
20	38751.0
21	46446.0
22	54369.0
23	65388.0
24	81921.0
25	106177.0
26	142173.0
27	190164.0
28	250666.0
29	324383.0
30	414792.0
31	525567.0
32	665730.0
33	858835.0
34	1163337.0
35	1677684.0
36	2637046.0
37	4001494.0
38	4678196.0
39	2764949.0
40	73056.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	25.608625930965122	12.750830364951563	10.855902057235935	50.78464164684738
2	21.992233136254598	19.640130840601987	35.22907647734777	23.138559545795648
3	25.485543991941782	22.04060352288225	22.78906984522818	29.684782639947787
4	27.639482963024015	27.959152085427835	19.444387472961175	24.956977478586975
5	29.10989192136913	29.947853522163452	21.659429158516282	19.282825397951132
6	23.960789030550877	33.03201435298019	21.988945828425532	21.0182507880434
7	21.32697120259203	18.727496858533417	37.794409162281006	22.15112277659354
8	21.593702169910685	22.194948855048892	29.23738291960855	26.97396605543187
9	21.55069706165565	21.060610402526617	31.698519504126416	25.69017303169131
10-14	24.60415157220084	26.37346951976235	24.669874046874842	24.352504861161968
15-19	24.91396053934802	25.23808493300626	25.168241485070187	24.67971304257553
20-24	24.694428474609616	25.48794615524382	25.48518975738658	24.33243561275999
25-29	24.599839109878317	25.48110144868198	25.415533778702397	24.503525662737303
30-34	24.648704729874375	25.4008587085666	25.379618330279698	24.570818231279333
35-39	24.665930482548255	25.540377551350385	25.32230850077391	24.47138346532745
40-44	24.65389970217304	25.362540280016994	25.47450621014026	24.50905380766971
45-49	24.546520798443584	25.437368130741618	25.40896434164778	24.607146729167013
50-54	24.607705901999534	25.506624675362115	25.43384088480615	24.4518285378322
55-59	24.61640944579577	25.43285691153912	25.407622093796945	24.54311154886816
60-64	24.51456495381767	25.46838791192473	25.51970853626982	24.497338597987785
65-69	24.5399700597382	25.568896170139677	25.503763224606775	24.38737054551535
70-74	24.578470540711876	25.501037821098816	25.41489601498589	24.50559562320342
75-79	24.557775620533736	25.458196372573955	25.517163840197338	24.46686416669497
80-84	24.49528704942415	25.587235170428112	25.518248214358707	24.399229565789025
85-89	24.595690985674246	25.568112583225123	25.44569646687845	24.39049996422218
90	24.299221139582453	25.68109314563346	25.65540779236114	24.36427792242295
>>END_MODULE
>>Per base GC content	fail
#Base	%GC
1	76.39326757781251
2	45.13079268205025
3	55.170326631889566
4	52.59646044161099
5	48.39271731932027
6	44.97903981859428
7	43.47809397918557
8	48.56766822534256
9	47.24087009334696
10-14	48.9566564333628
15-19	49.593673581923554
20-24	49.02686408736961
25-29	49.10336477261561
30-34	49.21952296115371
35-39	49.137313947875704
40-44	49.16295350984275
45-49	49.1536675276106
50-54	49.05953443983174
55-59	49.159520994663936
60-64	49.01190355180545
65-69	48.92734060525355
70-74	49.084066163915296
75-79	49.02463978722871
80-84	48.89451661521317
85-89	48.986190949896425
90	48.6634990620054
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	2.0
1	1.5
2	1.5
3	2.5
4	3.0
5	5.5
6	8.5
7	17.0
8	32.0
9	48.5
10	58.0
11	76.5
12	124.0
13	201.0
14	341.0
15	553.0
16	1002.0
17	1723.5
18	2992.5
19	5298.0
20	6727.0
21	9104.0
22	15406.5
23	25258.0
24	38848.5
25	58001.0
26	83209.0
27	114899.0
28	149670.0
29	187638.0
30	208805.0
31	228478.5
32	270855.0
33	319259.5
34	371689.0
35	421916.5
36	472590.0
37	530913.5
38	581717.5
39	622090.5
40	642809.0
41	656664.5
42	684363.5
43	710100.5
44	725306.5
45	730537.5
46	729500.5
47	724158.0
48	724597.0
49	725833.0
50	724243.0
51	716027.5
52	707249.0
53	696101.5
54	688705.0
55	687635.5
56	676655.0
57	661245.0
58	638463.5
59	609630.5
60	594892.0
61	577745.5
62	540159.0
63	494146.0
64	441352.5
65	388431.5
66	334535.5
67	278886.5
68	228398.5
69	181225.5
70	157087.0
71	136034.0
72	98359.5
73	68237.5
74	43453.0
75	24973.5
76	13561.0
77	6784.5
78	2948.0
79	1161.5
80	652.0
81	470.0
82	216.5
83	118.0
84	70.5
85	44.0
86	28.5
87	15.5
88	12.5
89	10.5
90	8.0
91	5.5
92	3.0
93	1.5
94	0.5
95	0.5
96	0.0
97	0.0
98	0.0
99	0.0
100	0.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.41505855337370745
2	0.0
3	0.0
4	0.0
5	0.0
6	0.0
7	0.002386412972119221
8	0.0
9	0.001926381555807082
10-14	0.001881336812959852
15-19	1.955133519326591E-4
20-24	0.0015583564227573707
25-29	0.0011194097796928715
30-34	0.0016216107425002899
35-39	0.004295543349814598
40-44	0.003454069217476977
45-49	0.002403664150230926
50-54	0.0027870236638243753
55-59	7.044231062279628E-4
60-64	5.577880922784685E-4
65-69	2.520588801876928E-4
70-74	0.0055222937933136354
75-79	0.0017366185965783246
80-84	0.0020461814038050348
85-89	0.0022177347861381033
90	0.0010350706867023128
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
90	2.086814E7
>>END_MODULE
>>Sequence Duplication Levels	fail
#Total Duplicate Percentage	54.32173992313709
#Duplication Level	Relative count
1	100.0
2	30.937775723709088
3	16.342800722658712
4	10.147682870467628
5	6.986051006260241
6	4.961976387546741
7	3.933658249653376
8	3.1994454014537204
9	2.617537078274022
10++	30.94827948405529
>>END_MODULE
>>Overrepresented sequences	pass
>>END_MODULE
>>Kmer Content	warn
#Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
AAAAA	5314405	2.868638	5.1472373	2
CCAGG	4382055	2.6139395	5.546476	1
CCTGG	4386810	2.6035328	6.068274	1
GAAGA	4470935	2.553228	5.1484923	2
CTTCT	4555535	2.5297444	5.3647976	1
AAGAA	4506930	2.502286	5.191903	2
CTGGA	4220000	2.4505494	8.534795	1
TCCAG	4096445	2.3636675	5.2081747	2
CTCCT	4064515	2.3185298	6.9929442	1
CTGGG	3783545	2.259878	8.08731	1
CAGGA	3836300	2.2390666	5.5282226	1
CTTCA	3942510	2.20046	5.447266	1
CCCAG	3662430	2.170777	6.855912	1
CTCCA	3781195	2.1678863	7.2869315	1
CAGAA	3681210	2.0888631	5.125262	1
CTCTG	3533625	2.028599	6.1506605	1
CTGGC	3196745	1.8972399	5.2619214	1
TGGAA	3282235	1.8649081	5.1290326	2
CTGAA	3267080	1.8444877	5.551466	1
CTCAG	3009060	1.7362413	6.0319815	1
CTGGT	2903445	1.6774949	5.021926	1
CTTGG	2833795	1.6372536	5.2334485	1
>>END_MODULE
